View on GitHub

CHIPS

Cellular and Hemodynamic Image Processing Suite

Known Issues

Bio-Formats in MATLAB R2013a: The current Bio-Formats Java library is not compatible with the Java version included with MATLAB R2013a. Please refer to the system requirements page for the workaround.
5D images: CHIPS does not currently support images with multiple slices in both space and time. In other words, CHIPS supports z-stack images, or repeated time series images (i.e. movies), but not a mix of both.
Non-square pixels: CHIPS is not currently designed to process images with unequal pixel aspect ratios (i.e. non-square pixels).
repmat with objects: There can be some unexpected behaviour in older MATLAB versions when using the function repmat with certain CHIPS classes. For example, in R2013a, scimArray = repmat(SCIM_TIF(), 1, 3) does not behave as expected, but the alternative scimArray(1:3) = SCIM_TIF() does.
Tests: There are several compatability issues when running the tests. Please contact the developers for more information.